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NGS Collection for Pipeline Pilot

Wed, 03/02/2011 - 7:38am

NGS Collection for Pipeline Pilot

NGS Collection for Pipeline Pilot is designed to provide genomics researchers, bioinformaticians, and information technologists with the tools required to simplify NGS application development, to integrate and automate NGS data processing, and to accelerate the analysis and interpretation of the huge volumes of data generated by current DNA sequencing instruments. A wide selection of algorithms is available, including methods for de novo assembly, mapping reads to reference sequences, identifying polymorphisms and structural variants, measuring RNA expression levels, and identifying transcription factor binding sites. The collection accommodates the high performance computing required by NGS analysis, including support for Pipeline Pilot’s own distributed processing system as well as third-party systems, such as Platform LSF, Altair PBS, and Oracle Grid Engine. The system supports native data formats from all major sequencing platforms including those from Illumina, Life Technologies SOLiD, Roche/454, and others.

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